A Spectral Decomposition Framework for Multiscale Nonlinear Dimensionality Reduction
arXiv
Publications
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Kind
Type
Year
20263 papers
20255 papers
GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data
Cell iScience
Cytosplore EvoViewer: Visual Analytics of Conserved Evolutionary Patterns in multi-species single-cell sequencing data
Proceedings of the 18th IEEE Pacific Visualization Symposium
DimenFix: A novel meta-strategy to preserve user-defined data values on dimensionality reduction layouts
Computers and Graphics
AI-in-the-Loop: The Future of Biomedical Visual Analytics Applications in the Era of AI
Computer Graphics and Applications
BioMedical Visualization - Past Work, Current Trends, and Open Challenges
Book, Springer Nature
20243 papers
Accelerating Hyperbolic t-SNE
IEEE Transactions on Visualization and Computer Graphics
Effect of White Matter Uncertainty Visualization in Neurosurgical Decision Making
Computer Graphics and Applications
ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data
IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VIS 2023) Best Paper Honorable Mention
20235 papers
Interactions for Seamlessly Coupled Exploration of High-Dimensional Images and Hierarchical Embeddings
Proceedings of the International Symposium on Vision, Modeling, and Visualization Best Paper Honorable Mention
Cytosplore Simian Viewer: Visual Exploration for Multi-Species Single-Cell RNA Sequencing Data
Eurographics Workshop on Visual Computing in Biology and Medicine
Interactive Visual Exploration of Region-Based Sensitivities in Fiber Tracking
Eurographics Workshop on Visual Computing in Biology and Medicine
SpaceWalker Enables Interactive Gradient Exploration for Spatial Transcriptomics Data
Cell Reports Methods
Comparative transcriptomics reveals human-specific cortical features
Science
20227 papers
SpaceWalker: a Visual Analytics Approach to Spatial Transcriptomics Data
Poster Presentation, Visual Computing in Biology and Medicine
Real-Time Algorithms for Visualizing and Processing Seismic and Reservoir Data
Interactive Data Processing and 3D Visualization of the Solid Earth, Springer
Incorporating Texture Information into Dimensionality Reduction for High-Dimensional Images
Proceedings of the 15th IEEE Pacific Visualization Symposium
Co-expression patterns of microglia markers Iba1, TMEM119 and P2RY12 in Alzheimer's disease
Neurobiology of Disease
Tumor-specific T cells support chemokine-driven spatial organization of intratumoral immune microaggregates needed for long survival
Journal for ImmunoTherapy of Cancer
Visual Analysis of RIS Data for Endmember Selection
Proceedings of Eurographics Workshop on Graphics and Cultural Heritage Short Papers
Identification of a Disease-Associated Network of Intestinal Immune Cells in Treatment-Naive Inflammatory Bowel Disease
Frontiers in Immunology
202110 papers
Uncertainty in the DTI Visualization Pipeline
Anisotropy Across Fields and Scales, Springer
Systems Analysis and Controlled Malaria Infection in Europeans and Africans Elucidate Naturally Acquired Immunity
Nature Immunology
A Progressive Approach for Uncertainty Visualization in Diffusion Tensor Imaging
Computer Graphics Forum (Proceedings of EuroVis 2021)
Visual Analysis of Tissue Images at Cellular Level
EuroVis 2021 - Dirk Bartz Prize 3rd Prize, Dirk Bartz Prize for Visual Computing in Medicine 2021
Iron Loading is a Prominent Feature of Activated Microglia in Alzheimer’s Disease Patients
Acta Neuropathologica Communications
InCorr: Interactive Data-Driven Correlation Panels for Digital Outcrop Analysis
IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VAST 2020)
Visual Cohort Comparison for Spatial Single-Cell Omics-Data
IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VAST 2020)
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Nature
Semi-Automated Background Removal Limits Loss of Data and Normalises the Images for Downstream Analysis of Imaging Mass Cytometry Data
Cytometry Part A
ImaCytE: Visual Exploration of Cellular Microenvironments for Imaging Mass Cytometry Data
IEEE Transactions on Visualization and Computer Graphics
20205 papers
Helminth Infections Drive Heterogeneity in Human Type 2 and Regulatory Cells
Science Translational Medicine
Visualizing Dynamic Changes at the Maternal-Fetal Interface Throughout Human Pregnancy by Mass Cytometry
Frontiers in Immunology
GPGPU Linear Complexity t-SNE Optimization
IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VAST 2019)
High-Dimensional Cytometric Analysis of Colorectal Cancer Reveals Novel Mediators of Antitumour Immunity
Gut
Multidimensional Analyses of Proinsulin Peptide-specific Regulatory T Cells Induced by Tolerogenic Dendritic Cells
Journal of Autoimmunity
20198 papers
Memory CD4+ T Cells are Generated in the Human Fetal Intestine
Nature Immunology Cover Image
Focus+Context Exploration of Hierarchical Embeddings
Computer Graphics Forum (Proceedings of EuroVis 2019)
Conserved Cell Types With Divergent Features in Human Versus Mouse Cortex
Nature
Cytosplore: Interactive Visual Single-Cell Profiling of the Immune System
Proceedings of Eurographics - Short Papers and Medical Prize Awards 1st Prize, Dirk Bartz Prize for Visual Computing in Medicine 2019
Guidelines for the Use of Flow Cytometry and Cell Sorting in Immunological Studies (Second Edition)
European Journal of Immunology
CyTOFmerge: Integrating mass cytometry data across multiple panels
Bioinformatics
Predicting cell types in single cell mass cytometry data
Cytometry Part A
The Anatomical Location Shapes the Immune Infiltrate in Tumors of Same Etiology and Impacts Survival
Clinical Cancer Research
20188 papers
Interactive Visual Exploration of 3D Mass Spectrometry Imaging Data Using Hierarchical Stochastic Neighbor Embedding Reveals Spatiomolecular Structures at Full Data Resolution
Journal of Proteome Research
Heterogeneity of Circulating CD8 T-cells Specific to Islet, Neo-antigen and Virus in Patients with Type 1 Diabetes Mellitus
PLOS one
The Contribution of Cytomegalovirus Infection to Immune Senescence is set by the Infectious Dose
Frontiers in Immunology
Mass Cytometry Reveals Innate Lymphoid Cell Differentiation Pathways in the Human Fetal Intestine
Journal of Experimental Medicine Cover Image
Multiscale Visualization and Exploration of Large Bipartite Graphs
Computer Graphics Forum (Proceedings of EuroVis 2018)
Cytofast: A workflow for visual and quantitative analysis of flow and mass cytometry data to discover immune signatures and correlations
Computational and Structural Biotechnology Journal
DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks
IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VAST 2017)
CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis
IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE InfoVis 2017)
20177 papers
Comparative Visualization for Diffusion Tensor Imaging Group Study at Multiple Levels of Detail
Proceedings of Visual Computing for Biology and Medicine (VCBM) Best Paper Award
Approximated and User Steerable tSNE for Progressive Visual Analytics
IEEE Transactions on Visualization and Computer Graphics
BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome
Nucleic Acids Research Selected for a highlight talk @ BioVis 2017
Mass Cytometry Marker Panel Extension
Poster Presentation, Keystone Symposia on Molecular and Cellular Biology; Single Cell Omics, Stockholm, Swe
Interactive Visual Analysis of Mass Cytometry Data by Hierarchical Stochastic Neighbor Embedding Reveals Rare Cell Types
Poster Presentation, Keystone Symposia on Molecular and Cellular Biology; Single Cell Omics, Stockholm, Swe
Visual Analysis of Mass Cytometry Data by Hierarchical Stochastic Neighbor Embedding Reveals Rare Cell Types
Nature Communications Selected talk @ BioVis/ISMB 2018
Overview + Detail Visualization for Ensembles of Diffusion Tensors
Computer Graphics Forum (Proceedings of EuroVis 2017)
20164 papers
Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets
Immunity LUMC Best Article Prize 2016 (non clinical)
Hierarchical Stochastic Neighbor Embedding
Computer Graphics Forum (Proceedings of EuroVis 2016)
Cytosplore: Interactive Immune Cell Phenotyping for Large Single-Cell Datasets
Computer Graphics Forum (Proceedings of EuroVis 2016)
Visual Analysis of Reservoir Simulation Ensembles
Proceedings of Workshop on Visualisation in Environmental Sciences
20152 papers
Visualizing Uncertainties in a Storm Surge Ensemble Data Assimilation and Forecasting System
Natural Hazards
Probability Maps for the Visualization of Assimilation Ensemble Flow Data
Proceedings of Workshop on Visualisation in Environmental Sciences
20141 paper
Ovis: A Framework for Visual Analysis of Ocean Forecast Ensembles
IEEE Transactions on Visualization and Computer Graphics
20133 papers
Visual Workflows for Oil and Gas Exploration
King Abdullah University of Science and Technology
Visual Analysis of Uncertainties in Ocean Forecasts for Planning and Operation of Off-Shore Structures
Proceedings of IEEE Pacific Visualization Symposium Best Paper Honorable Mention
Extraction and Visual Analysis of Seismic Horizon Ensembles
Eurographics (short papers)
20122 papers
SeiVis: An Interactive Visual Subsurface Modeling Application
IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE SciVis)
Combined Surface and Volumetric Occlusion Shading
Proceedings of IEEE Pacific Visualization Symposium Invited for extended version in TVCG
20111 paper
Interactive Seismic Interpretation with Piecewise Global Energy Minimization
Proceedings of IEEE Pacific Visualization Symposium
20101 paper
20091 paper
Seismic Horizon Tracing with Diffusion Tensors
Poster Presentation, IEEE Visweek, Atlantic City, NJ
20083 papers
Interactive Volume Exploration for Feature Detection and Quantification in Industrial CT Data
IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE SciVis)
Direct Processing of Compressed Volume Data
Universität Koblenz-Landau
Interaktive Exploration und Quantifizierung von Ungänzen in komplexen Bauteilen
Proceedings of Industrielle Computertomografie (CT Tagung Wels)