@article{2026_pathwayfinder,
    author = { Chang Li and Julian Thijssen and Thomas Kroes and Lisa Koorneef and Thomas H{\"o}llt and Louise van der Weerd and Boudewijn Lelieveldt },
    title = { PathwayFinder enables linked exploration of cell types and gene modules in spatially resolved transcriptomics data },
    journal = { Cell iScience },
    volume = { 29 },
    number = { 11 },
    pages = { 118043 },
    year = { 2026 },
    doi = { 10.1016/j.isci.2026.118043 },
}

@article{2026_sdmp,
    author = { Zeyang Huang and Angelos Chatzimparmpas and Thomas H{\"o}llt and Takanori Fujiwara },
    title = { A Spectral Decomposition Framework for Multiscale Nonlinear Dimensionality Reduction },
    journal = { arXiv },
    year = { 2026 },
    doi = { 10.48550/arXiv.2604.02535 },
}

@article{2026_mucosalimmunology,
    author = { Qinyue Jiang and Veerle A. Merkus and Ciska Lindelauf and Jens Krijgsman and Nannan Guo and Laura F. Ouboter and Thomas H{\"o}llt and Philip W. Voorneveld and Caroline R. Meijer-Boekel and Frits Koning and Andrea E van der Meulen-de Jong and Maria Fernanda Pascutti and Vincent van Unen },
    title = { Tissue-embedded CD4+ plasticity defines mucosal immunity in inflammatory bowel disease },
    journal = { Mucosal Immunology },
    pages = { 100369 },
    year = { 2026 },
    doi = { 10.1016/j.mucimm.2026.100369 },
}

@article{2025_dimenfix,
    author = { Zixuan Han and Diede van der Hoorn and Thomas H{\"o}llt and Qiaodan Luo and Leonardo Christino and Evangelos Milios and Fernando Paulovich },
    title = { DimenFix: A novel meta-strategy to preserve user-defined data values on dimensionality reduction layouts },
    journal = { Computers and Graphics },
    volume = { 130 },
    pages = { 104231 },
    year = { 2025 },
    doi = { 10.1016/j.cag.2025.104231 },
}

@article{2025_ai_in_the_loop,
    author = { Katja B{\"u}hler and Thomas H{\"o}llt and Thomas Schultz and Pere-Pau V{\'a}zquez },
    title = { AI-in-the-Loop: The Future of Biomedical Visual Analytics Applications in the Era of AI },
    journal = { Computer Graphics and Applications },
    volume = { 45 },
    pages = { 90 -- 99 },
    year = { 2025 },
    doi = { 10.1109/MCG.2024.3517293 },
}

@article{2025_genesurfer,
    author = { Chang Li and Julian Thijssen and Thomas Kroes and Ximaine van der Burg and Louise van der Weerd and Thomas H{\"o}llt and Boudewijn Lelieveldt },
    title = { GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data },
    journal = { Cell iScience },
    volume = { 28 },
    number = { 7 },
    pages = { 112713 },
    year = { 2025 },
    doi = { 10.1016/j.isci.2025.112713 },
}

@inproceedings{2025_evoviewer,
    author = { Soumyadeep Basu and Morgan Wirthlin and Jeroen Eggermont and Thomas Kroes and Boudewijn Lelieveldt and Ed S. Lein and Trygve E. Bakken and Thomas H{\"o}llt },
    title = { Cytosplore EvoViewer: Visual Analytics of Conserved Evolutionary Patterns in multi-species single-cell sequencing data },
    booktitle = { Proceedings of the 18th IEEE Pacific Visualization Symposium },
    pages = { 149 -- 159 },
    year = { 2025 },
    doi = { 10.1109/PacificVis64226.2025.00021 },
}

@book{2024_book,
    author = { Katar{\'i}na Furmanov{\'a} and Barbora Kozl{\'i}kov{\'a} and Thomas H{\"o}llt and Meister Eduard Groeller and Bernhard Preim and Renata Georgia Raidou },
    title = { BioMedical Visualization - Past Work, Current Trends, and Open Challenges },
    publisher = { Springer Nature },
    year = { 2025 },
    doi = { 10.1007/978-3-031-66789-3 },
}

@article{2024_cga_faizan,
    author = { Faizan Siddiqui and H. Bart Brouwers and Geert-Jan Rutten and Thomas H{\"o}llt and Anna Vilanova },
    title = { Effect of White Matter Uncertainty Visualization in Neurosurgical Decision Making },
    journal = { Computer Graphics and Applications },
    number = { 1 },
    pages = { 1 -- 16 },
    year = { 2024 },
    doi = { 10.1109/MCG.2024.3462926 },
}

@article{2024_hyperbolic,
    author = { Martin Skrodzki and Hunter van Geffen and Nicolas F. Chaves-de-Plaza and Thomas H{\"o}llt and Elmar Eisemann and Klaus Hildebrandt },
    title = { Accelerating Hyperbolic t-SNE },
    journal = { IEEE Transactions on Visualization and Computer Graphics },
    year = { 2024 },
    doi = { 10.1109/TVCG.2024.3364841 },
}

@article{2023_vis,
    author = { Alexander Vieth and Thomas Kroes and Julian Thijssen and Baldur van Lew and Jeroen Eggermont and Soumyadeep Basu and Elmar Eisemann and Anna Vilanova and Thomas H{\"o}llt and Boudewijn Lelieveldt },
    title = { ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data },
    journal = { IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VIS 2023) },
    volume = { 30 },
    number = { 2 },
    year = { 2024 },
    doi = { 10.1109/TVCG.2023.3326582 },
}

@inproceedings{2023_vmv,
    author = { Alexander Vieth and Boudewijn Lelieveldt and Elmar Eisemann and Anna Vilanova and Thomas H{\"o}llt },
    title = { Interactions for Seamlessly Coupled Exploration of High-Dimensional Images and Hierarchical Embeddings },
    booktitle = { Proceedings of the International Symposium on Vision, Modeling, and Visualization },
    pages = { 63 -- 70 },
    year = { 2023 },
    doi = { 10.2312/vmv.20231227 },
}

@inproceedings{2023_vcbm_soumyadeep,
    author = { Soumyadeep Basu and Jeroen Eggermont and Thomas Kroes and Nikolas Jorstad and Trygve Bakken and Ed Lein and Boudewijn Lelieveldt and Thomas H{\"o}llt },
    title = { Cytosplore Simian Viewer: Visual Exploration for Multi-Species Single-Cell RNA Sequencing Data },
    booktitle = { Eurographics Workshop on Visual Computing in Biology and Medicine },
    pages = { 111 -- 120 },
    year = { 2023 },
    doi = { 10.2312/vcbm.20231219 },
}

@inproceedings{2023_vcbm_faizan,
    author = { Faizan Siddiqui and Thomas H{\"o}llt and Anna Vilanova },
    title = { Interactive Visual Exploration of Region-Based Sensitivities in Fiber Tracking },
    booktitle = { Eurographics Workshop on Visual Computing in Biology and Medicine },
    pages = { 13 -- 22 },
    year = { 2023 },
    doi = { 10.2312/vcbm.20231208 },
}

@article{2023_spacewalker,
    author = { Chang Li and Julian Thijssen and Thomas Kroes and Mitchell de Boer and Tamim Abdelaal and Thomas H{\"o}llt and Boudewijn Lelieveldt },
    title = { SpaceWalker Enables Interactive Gradient Exploration for Spatial Transcriptomics Data },
    journal = { Cell Reports Methods },
    year = { 2023 },
    doi = { 10.1016/j.crmeth.2023.100645 },
}

@article{2022_great_apes,
    author = { Nikolas L. Jorstad and Janet H.T. Song and David Exposito-Alonso and Hamsini Suresh and Nathan Castro-Pacheco and Fenna M. Krienen and Anna Marie Yanny and Jennie Close and Emily Gelfand and Kyle J. Travaglini and Soumyadeep Basu and Marc Beaudin and Darren Bertagnolli and Megan Crow and Song-Lin Ding and Jeroen Eggermont and Alexandra Glandon and Jeff Goldy and Thomas Kroes and Brian Long and Delissa McMillen and Trangthanh Pham and Christine Rimorin and Kimberly Siletti and Saroja Somasundaram and Michael Tieu and Amy Torkelson and Guoping Feng and William D Hopkins and Thomas H{\"o}llt and C. Dirk Keene and Sten Linnarsson and Steven A. McCarroll and Boudewijn Lelieveldt and Chet C. Sherwood and Kimberly Smith and Christopher A. Walsh and Alexander Dobin and Jesse Gillis and Ed S. Lein and Rebecca D. Hodge and Trygve E. Bakken },
    title = { Comparative transcriptomics reveals human-specific cortical features },
    journal = { Science },
    volume = { 382 },
    pages = { eade9516 },
    year = { 2023 },
    doi = { 10.1126/science.ade9516 },
}

@misc{2022_vcbm_chang,
    author = { Chang Li and Thomas H{\"o}llt and Boudewijn Lelieveldt },
    title = { SpaceWalker: a Visual Analytics Approach to Spatial Transcriptomics Data },
    howpublished = { Poster presentation at Poster Presentation, Visual Computing in Biology and Medicine },
    year = { 2022 },
}

@inproceedings{2022_gch_andra,
    author = { Andra Popa and Francesca Gabrieli and Thomas Kroes and Anna Krekeler and Matthias Alfeld and Boudewijn Lelieveldt and Elmar Eisemann and Thomas H{\"o}llt },
    title = { Visual Analysis of RIS Data for Endmember Selection },
    booktitle = { Proceedings of Eurographics Workshop on Graphics and Cultural Heritage Short Papers },
    year = { 2022 },
    doi = { 10.2312/gch.20221233 },
}

@inproceedings{2022_pacific_vis_spidr,
    author = { Alexander Vieth and Anna Vilanova and Boudewijn Lelieveldt and Elmar Eisemann and Thomas H{\"o}llt },
    title = { Incorporating Texture Information into Dimensionality Reduction for High-Dimensional Images },
    booktitle = { Proceedings of the 15th IEEE Pacific Visualization Symposium },
    pages = { 11 -- 20 },
    year = { 2022 },
    doi = { 10.1109/PacificVis53943.2022.00010 },
}

@article{2022_front_immunol,
    author = { Vincent van Unen and Laura F. Ouboter and Na Li and Mette Schreurs and Tamim Abdelaal and Yvonne Kooy-Winkelaar and Guillaume Beyrend and Thomas H{\"o}llt and P. W. Jeroen Maljaars and M. Luisa Mearin and Ahmed Mahfouz and Anne M. C. Witte and Cornelis H. M. Clemens and Sunje Abraham and Johanna C. Escher and Boudewijn Lelieveldt and M. Fernanda Pascutti and Andrea E. van der Meulen – de Jong and Frits Koning },
    title = { Identification of a Disease-Associated Network of Intestinal Immune Cells in Treatment-Naive Inflammatory Bowel Disease },
    journal = { Frontiers in Immunology },
    volume = { 12 },
    year = { 2022 },
    doi = { 10.3389/fimmu.2022.893803 },
}

@article{2022_neurobiology_of_disease,
    author = { Boyd Kenkhuis and Antonios Somarakis and Lynn R.T. Kleindouwel and Willeke M.C. van Roon-Mom and Thomas H{\"o}llt and Louise van der Weerd },
    title = { Co-expression patterns of microglia markers Iba1, TMEM119 and P2RY12 in Alzheimer's disease },
    journal = { Neurobiology of Disease },
    volume = { 167 },
    pages = { 105684 },
    year = { 2022 },
    doi = { 10.1016/j.nbd.2022.105684 },
}

@article{2022_immuno_therapy_cancer,
    author = { Ziena Abdulrahman and Saskia J. Santegoets and Gregor Sturm and Pornpimol Charoentong and Marieke E. Ijsselsteijn and Antonios Somarakis and Thomas H{\"o}llt and Francesca Finotello and Zlatko Trajanoski and Sylvia L. van Egmond and Dana A. M. Mustafa and Marij J. P. Welters and Noel F.C.C. De Miranda and Sjoerd H. van der Burg },
    title = { Tumor-specific T cells support chemokine-driven spatial organization of intratumoral immune microaggregates needed for long survival },
    journal = { Journal for ImmunoTherapy of Cancer },
    volume = { 10 },
    number = { 2 },
    pages = { e004346 },
    year = { 2022 },
    doi = { 10.1136/jitc-2021-004346 },
}

@inbook{2022_seismic,
    author = { Daniel Patel and Thomas H{\"o}llt and Markus Hadwiger },
    title = { Real-Time Algorithms for Visualizing and Processing Seismic and Reservoir Data },
    booktitle = { Interactive Data Processing and 3D Visualization of the Solid Earth },
    chapter = { 2 },
    pages = { 45 -- 78 },
    editor = { Daniel Patel },
    publisher = { Springer },
    year = { 2022 },
    doi = { 10.1007/978-3-030-90716-7_2 },
}

@article{2020_cellular_diversity_evolution,
    author = { Trygve E. Bakken and Nikolas L. Jorstad and Qiwen Hu and Blue B. Lake and Wei Tian and Brian E. Kalmbach and Megan Crow and Rebecca D. Hodge and Fenna M. Krienen and Staci A. Sorensen and Jeroen Eggermont and Zizhen Yao and Brian D. Aevermann and Andrew I. Aldridge and Anna Bartlett and Darren Bertagnolli and Tamara Casper and Rosa G. Castanon and Kirsten Crichton and Tanya L. Daigle and Rachel Dalley and Nick Dee and Nikolai Dembrow and Dinh Diep and Song-Lin Ding and Weixiu Dong and Rongxin Fang and Stephan Fischer and Melissa Goldman and Jeff Goldy and Lucas T. Graybuck and Brian R. Herb and Xiaomeng Hou and Jayaram Kancherla and Matthew Kroll and Kanan Lathia and Baldur van Lew and Yang Eric Li and Christine S. Liu and Hanqing Liu and Jacinta D. Lucero and Anup Mahurkar and Delissa McMillen and Jeremy A. Miller and Marmar Moussa and Joseph R. Nery and Philip R. Nicovich and Sheng-Yong Niu and Joshua Orvis and Julia K. Osteen and Scott Owen and Carter R. Palmer and Thanh Pham and Nongluk Plongthongkum and Olivier Poirion and Nora M. Reed and Christine Rimorin and Angeline Rivkin and William J. Romanow and Adriana E. Sede{\~n}o-Cort{\'e}s and Kimberly Siletti and Saroja Somasundaram and Josef Sulc and Michael Tieu and Amy Torkelson and Herman Tung and Xinxin Wang and Fangming Xie and Anna Marie Yanny and Renee Zhang and Seth A. Ament and M. Margarita Behrens and Hector Corrada Bravo and Jerold Chun and Alexander Dobin and Jesse Gillis and Ronna Hertzano and Patrick R. Hof and Thomas H{\"o}llt and Gregory D. Horwitz and C. Dirk Keene and Peter V. Kharchenko and Andrew L. Ko and Boudewijn Lelieveldt and Chongyuan Luo and Eran A. Mukamel and Ant{\'o}nio Pinto-Duarte and Sebastian Preissl and Aviv Regev and Bing Ren and Richard H. Scheuermann and Kimberly Smith and William J. Spain and Owen R. White and Christof Koch and Michael Hawrylycz and Bosiljka Tasic and Evan Z. Macosko and Steven A. McCarroll and Jonathan T. Ting and Hongkui Zeng and Kun Zhang and Guoping Feng and Joseph R. Ecker and Sten Linnarsson and Ed S. Lein },
    title = { Comparative cellular analysis of motor cortex in human, marmoset and mouse },
    journal = { Nature },
    volume = { 598 },
    pages = { 111 -- 119 },
    year = { 2021 },
    doi = { 10.1038/s41586-021-03465-8 },
}

@article{2020_background_removal,
    author = { Marieke E. Ijsselsteijn and Antonios Somarakis and Boudewijn Lelieveldt and Thomas H{\"o}llt and Noel F.C.C. De Miranda },
    title = { Semi-Automated Background Removal Limits Loss of Data and Normalises the Images for Downstream Analysis of Imaging Mass Cytometry Data },
    journal = { Cytometry Part A },
    volume = { 99 },
    number = { 12 },
    pages = { 1187 -- 1197 },
    year = { 2021 },
    doi = { 10.1002/cyto.a.24480 },
}

@article{2021_eurovis,
    author = { Faizan Siddiqui and Thomas H{\"o}llt and Anna Vilanova },
    title = { A Progressive Approach for Uncertainty Visualization in Diffusion Tensor Imaging },
    journal = { Computer Graphics Forum (Proceedings of EuroVis 2021) },
    volume = { 40 },
    number = { 3 },
    pages = { 411 -- 422 },
    year = { 2021 },
    doi = { 10.1111/cgf.14317 },
}

@inproceedings{2021_dirk_bartz_prize,
    author = { Antonios Somarakis and Marieke E. Ijsselsteijn and Boyd Kenkhuis and Vincent van Unen and Sietse J. Luk and Frits Koning and Louise van der Weerd and Noel F.C.C. De Miranda and Boudewijn Lelieveldt and Thomas H{\"o}llt },
    title = { Visual Analysis of Tissue Images at Cellular Level },
    booktitle = { EuroVis 2021 - Dirk Bartz Prize },
    pages = { 1 -- 5 },
    year = { 2021 },
    doi = { 10.2312/evm.20211074 },
}

@article{2021_nature_immunology,
    author = { Sanne E. de Jong and Vincent van Unen and Mikhael D. Manurung and Koen A. Stam and Jelle J. Goeman and Simon P. Jochems and Thomas H{\"o}llt and Nicola Pezzotti and Yoanne D. Mouwenda and Madeleine Eunice Betouke Ongwe and Freia-Raphaella Lorenz and Yvonne C. M. Kruize and Shohreh Azimi and Marion H. K{\"o}nig and Anna Vilanova and Elmar Eisemann and Boudewijn Lelieveldt and Meta Roestenberg and B. Kim Lee Sim and Marcel Reinders and Rolf Fendel and Stephen L. Hoffman and Peter G. Kremsner and Frits Koning and Benjamin Mordm{\"u}ller and Bertrand Lell and Maria Yazdanbakhsh },
    title = { Systems Analysis and Controlled Malaria Infection in Europeans and Africans Elucidate Naturally Acquired Immunity },
    journal = { Nature Immunology },
    year = { 2021 },
    doi = { 10.1038/s41590-021-00911-7 },
}

@article{2021_acta_neuropathologica_communications,
    author = { Boyd Kenkhuis and Antonios Somarakis and Lorraine de Haan and Oleh Dzyubachyk and Marieke E. Ijsselsteijn and Noel F.C.C. De Miranda and Boudewijn Lelieveldt and Willeke M. C. van Roon-Mom and Thomas H{\"o}llt and Louise van der Weerd },
    title = { Iron Loading is a Prominent Feature of Activated Microglia in Alzheimer’s Disease Patients },
    journal = { Acta Neuropathologica Communications },
    volume = { 27 },
    chapter = { 9 },
    year = { 2021 },
    doi = { 10.1186/s40478-021-01126-5 },
}

@article{2020_vis_incorr,
    author = { Thomas Ortner and Andreas Walch and Rebecca Nowak and Robert Barnes and Thomas H{\"o}llt and Meister Eduard Gr{\"o}ller },
    title = { InCorr: Interactive Data-Driven Correlation Panels for Digital Outcrop Analysis },
    journal = { IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VAST 2020) },
    volume = { 27 },
    number = { 2 },
    year = { 2021 },
    doi = { 10.1109/TVCG.2020.3030409 },
}

@article{2020_vis_cohort,
    author = { Antonios Somarakis and Marieke E. Ijsselsteijn and Sietse J. Luk and Boyd Kenkhuis and Noel F.C.C. De Miranda and Boudewijn Lelieveldt and Thomas H{\"o}llt },
    title = { Visual Cohort Comparison for Spatial Single-Cell Omics-Data },
    journal = { IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VAST 2020) },
    volume = { 27 },
    number = { 2 },
    year = { 2021 },
    doi = { 10.1109/TVCG.2020.3030336 },
}

@inbook{2021_tract_uncertainty_chapter,
    author = { Faizan Siddiqui and Thomas H{\"o}llt and Anna Vilanova },
    title = { Uncertainty in the DTI Visualization Pipeline },
    booktitle = { Anisotropy Across Fields and Scales },
    chapter = { 6 },
    pages = { 125 -- 148 },
    editor = { E. Özarslan, T. Schultz, E. Zhang, A. Fuster },
    publisher = { Springer },
    year = { 2021 },
    doi = { 10.1007/978-3-030-56215-1_6 },
}

@article{2019_imacyte,
    author = { Antonios Somarakis and Vincent van Unen and Frits Koning and Boudewijn Lelieveldt and Thomas H{\"o}llt },
    title = { ImaCytE: Visual Exploration of Cellular Microenvironments for Imaging Mass Cytometry Data },
    journal = { IEEE Transactions on Visualization and Computer Graphics },
    volume = { 27 },
    number = { 1 },
    pages = { 98 -- 110 },
    year = { 2021 },
    doi = { 10.1109/TVCG.2019.2931299 },
}

@article{2020_front_immunol,
    author = { Anita van der Zwan and Vincent van Unen and Guillaume Beyrend and Sandra Laban and Carin van der Keur and Hanneke J. M. Kapsenberg and Thomas H{\"o}llt and Susana M. Chuva de Sousa Lopes and Marie-Louise P. van der Hoorn and Frits Koning and Frans H. J. Claas and Michael Eikmans and Sebastiaan Heidt },
    title = { Visualizing Dynamic Changes at the Maternal-Fetal Interface Throughout Human Pregnancy by Mass Cytometry },
    journal = { Frontiers in Immunology },
    volume = { 11 },
    number = { 571300 },
    year = { 2020 },
    doi = { 10.3389/fimmu.2020.571300 },
}

@article{2020_helminth,
    author = { Karin de Ruiter and Simon P. Jochems and Dicky L. Tahapary and Koen A. Stam and Marion K{\"o}nig and Vincent van Unen and Sandra Laban and Thomas H{\"o}llt and Moustapha Mbow and Boudewijn Lelieveldt and Frits Koning and Erliyani Sartono and Johannes W. A. Smit and Taniawati Supali and Maria Yazdanbakhsh },
    title = { Helminth Infections Drive Heterogeneity in Human Type 2 and Regulatory Cells },
    journal = { Science Translational Medicine },
    volume = { 12 },
    number = { 524 },
    pages = { eaaw3703 },
    year = { 2020 },
    doi = { 10.1126/scitranslmed.aaw3703 },
}

@article{2019_vis_GPUtSNE,
    author = { Nicola Pezzotti and Julian Thijssen and Alexander Mordvintsev and Thomas H{\"o}llt and Baldur van Lew and Boudewijn Lelieveldt and Elmar Eisemann and Anna Vilanova },
    title = { GPGPU Linear Complexity t-SNE Optimization },
    journal = { IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VAST 2019) },
    volume = { 26 },
    number = { 1 },
    pages = { 1172 -- 1181 },
    year = { 2020 },
    doi = { 10.1109/TVCG.2019.2934307 },
}

@article{2019_JofAutoimmunity,
    author = { Jessica S. Suwandi and Sandra Laban and Kincso Vass and Antoinette Joosten and Vincent van Unen and Boudewijn Lelieveldt and Thomas H{\"o}llt and Jaap Jan Zwaginga and Tatjana Nikolic and Bart O.Roep },
    title = { Multidimensional Analyses of Proinsulin Peptide-specific Regulatory T Cells Induced by Tolerogenic Dendritic Cells },
    journal = { Journal of Autoimmunity },
    volume = { 107 },
    pages = { 102361 },
    year = { 2020 },
    doi = { 10.1016/j.jaut.2019.102361 },
}

@article{2019_gut_antitumor,
    author = { Natasja L de Vries and Vincent van Unen and Marieke E. Ijsselsteijn and Tamim Abdelaal and Ruud van der Breggen and Arantza Farina Sarasqueta and Ahmed Mahfouz and Koen C M J Peeters and Thomas H{\"o}llt and Boudewijn Lelieveldt and Frits Koning and Noel F.C.C. De Miranda },
    title = { High-Dimensional Cytometric Analysis of Colorectal Cancer Reveals Novel Mediators of Antitumour Immunity },
    journal = { Gut },
    volume = { 69 },
    pages = { 691 -- 703 },
    year = { 2020 },
    doi = { 10.1136/gutjnl-2019-318672 },
}

@article{2019_cytometry_guidelines,
    author = { Andrea Cossarizza and Hyun‐Dong Chang and Andreas Radbruch and Andreas Acs and Dieter Adam and Sabine Adam‐Klages and William W. Agace and Nima Aghaeepour and M{\"u}beccel Akdis and Matthieu Allez and Larissa Nogueira Almeida and Giorgia Alvisi and Graham Anderson and Immanuel Andr{\"a} and Francesco Annunziato and Achille Anselmo and Petra Bacher and Cosima T. Baldari and Sudipto Bari and Vincenzo Barnaba and Joana Barros‐Martins and Luca Battistini and Wolfgang Bauer and Sabine Baumgart and Nicole Baumgarth and Dirk Baumjohann and Bianka Baying and Mary Bebawy and Burkhard Becher and Wolfgang Beisker and Vladimir Benes and Rudi Beyaert and Alfonso Blanco and Dominic A. Boardman and Christian Bogdan and Jessica G. Borger and Giovanna Borsellino and Philip E. Boulais and Jolene A. Bradford and Dirk Brenner and Ryan R. Brinkman and Anna E. S. Brooks and Dirk H. Busch and Martin B{\"u}scher and Timothy P. Bushnell and Federica Calzetti and Garth Cameron and Ilenia Cammarata and Xuetao Cao and Susanna L. Cardell and Stefano Casola and Marco A. Cassatella and Andrea Cavani and Antonio Celada and Lucienne Chatenoud and Pratip K. Chattopadhyay and Sue Chow and Eleni Christakou and Luka Čičin‐Šain and Mario Clerici and Federico S. Colombo and Laura Cook and Anne Cooke and Andrea M. Cooper and Alexandra J. Corbett and Antonio Cosma and Lorenzo Cosmi and Pierre G. Coulie and Ana Cumano and Ljiljana Cvetkovic and Van Duc Dang and Chantip Dang‐Heine and Martin S. Davey and Derek Davies and Sara De Biasi and Genny Del Zotto and Gelo Victoriano Dela Cruz and Michael Delacher and Silvia Della Bella and Paolo Dellabona and G{\"u}nnur Deniz and Mark Dessing and James P. Di Santo and Andreas Diefenbach and Francesco Dieli and Andreas Dolf and Thomas D{\"o}rner and Regine J. Dress and Diana Dudziak and Michael Dustin and Charles‐Antoine Dutertre and Friederike Ebner and Sidonia B. G. Eckle and Matthias Edinger and Pascale Eede and G{\"o}tz R.A. Ehrhardt and Marcus Eich and Pablo Engel and Britta Engelhardt and Anna Erdei and Charlotte Esser and Bart Everts and Maximilien Evrard and Christine S. Falk and Todd A. Fehniger and Mar Felipo‐Benavent and Helen Ferry and Markus Feuerer and Andrew Filby and Kata Filkor and Simon Fillatreau and Marie Follo and Irmgard F{\"o}rster and John Foster and Gemma A. Foulds and Britta Frehse and Paul S. Frenette and Stefan Frischbutter and Wolfgang Fritzsche and David W. Galbraith and Anastasia Gangaev and Natalio Garbi and Brice Gaudilliere and Ricardo T. Gazzinelli and Jens Geginat and Wilhelm Gerner and Nicholas A. Gherardin and Kamran Ghoreschi and Lara Gibellini and Florent Ginhoux and Keisuke Goda and Dale I. Godfrey and Christoph Goettlinger and Jose M. Gonz{\'a}lez‐Navajas and Carl S. Goodyear and Andrea Gori and Jane L. Grogan and Daryl Grummitt and Andreas Gr{\"u}tzkau and Claudia Haftmann and Jonas Hahn and Hamida Hammad and G{\"u}nter H{\"a}mmerling and Leo Hansmann and Goran Hansson and Christopher M. Harpur and Susanne Hartmann and Andrea Hauser and Anja E. Hauser and David L. Haviland and David Hedley and Daniela C. Hern{\'a}ndez and Guadalupe Herrera and Martin Herrmann and Christoph Hess and Thomas H{\"o}fer and Petra Hoffmann and Kristin Hogquist and Tristan Holland and Thomas H{\"o}llt and Rikard Holmdahl and Pleun Hombrink and Jessica P. Houston and Bimba F. Hoyer and Bo Huang and Fang‐Ping Huang and Johanna E. Huber and Jochen Huehn and Michael Hundemer and Christopher A. Hunter and William Y. K. Hwang and Anna Iannone and Florian Ingelfinger and Sabine M Ivison and Hans‐Martin J{\"a}ck and Peter K. Jani and Beatriz J{\'a}vega and Stipan Jonjic and Toralf Kaiser and Tomas Kalina and Thomas Kamradt and Stefan H. E. Kaufmann and Baerbel Keller and Steven L. C. Ketelaars and Ahad Khalilnezhad and Srijit Khan and Jan Kisielow and Paul Klenerman and Jasmin Knopf and Hui‐Fern Koay and Katja Kobow and Jay K. Kolls and Wan Ting Kong and Manfred Kopf and Thomas Korn and Katharina Kriegsmann and Hendy Kristyanto and Thomas Kroneis and Andreas Krueger and Jenny K{\"u}hne and Christian Kukat and D{\'e}sir{\'e}e Kunkel and Heike Kunze‐Schumacher and Tomohiro Kurosaki and Christian Kurts and Pia Kvistborg and Immanuel Kwok and Jonathan Landry and Olivier Lantz and Paola Lanuti and Francesca LaRosa and Agn{\`e}s Lehuen and Salom{\'e} LeibundGut‐Landmann and Michael D. Leipold and Leslie Y.T. Leung and Megan K. Levings and Andreia C. Lino and Francesco Liotta and Virginia Litwin and Yanling Liu and Hans‐Gustaf Ljunggren and Michael Lohoff and Giovanna Lombardi and Lilly Lopez and Miguel L{\'o}pez‐Botet and Amy E. Lovett‐Racke and Erik Lubberts and Herve Luche and Burkhard Ludewig and Enrico Lugli and Sebastian Lunemann and Holden T. Maecker and Laura Maggi and Orla Maguire and Florian Mair and Kerstin H. Mair and Alberto Mantovani and Rudolf A. Manz and Aaron J. Marshall and Alicia Mart{\'i}nez‐Romero and Gl{\`o}ria Martrus and Ivana Marventano and Wlodzimierz Maslinski and Giuseppe Matarese and Anna Vittoria Mattioli and Christian Mauer{\"o}der and Alessio Mazzoni and James McCluskey and Mairi McGrath and Helen M. McGuire and Iain B. McInnes and Henrik E. Mei and Fritz Melchers and Susanne Melzer and Dirk Mielenz and Stephen D. Miller and Kingston H.G. Mills and Hans Minderman and Jenny Mj{\"o}sberg and Jonni Moore and Barry Moran and Lorenzo Moretta and Tim R. Mosmann and Susann M{\"u}ller and Gabriele Multhoff and Luis Enrique Mu{\~n}oz and Christian M{\"u}nz and Toshinori Nakayama and Milena Nasi and Katrin Neumann and Lai Guan Ng and Antonia Niedobitek and Sussan Nourshargh and Gabriel N{\'u}{\~n}ez and Jos{\'e}‐Enrique O Connor and Aaron Ochel and Anna Oja and Diana Ordonez and Alberto Orfao and Eva Orlowski‐Oliver and Wenjun Ouyang and Annette Oxenius and Raghavendra Palankar and Isabel Panse and Kovit Pattanapanyasat and Malte Paulsen and Dinko Pavlinic and Livius Penter and P{\"a}rt Peterson and Christian Peth and Jordi Petriz and Federica Piancone and Winfried F. Pickl and Silvia Piconese and Marcello Pinti and A. Graham Pockley and Malgorzata Justyna Podolska and Zhiyong Poon and Katharina Pracht and Immo Prinz and Carlo E. M. Pucillo and Sally A. Quataert and Linda Quatrini and Kylie M. Quinn and Helena Radbruch and Tim R. D. J. Radstake and Susann Rahmig and Hans‐Peter Rahn and Bartek Rajwa and Gevitha Ravichandran and Yotam Raz and Jonathan A. Rebhahn and Diether Recktenwald and Dorothea Reimer and Caetano Reis e Sousa and Ester B.M. Remmerswaal and Lisa Richter and Laura G. Rico and Andy Riddell and Aja M. Rieger and J. Paul Robinson and Chiara Romagnani and Anna Rubartelli and J{\"u}rgen Ruland and Armin Saalm{\"u}ller and Yvan Saeys and Takashi Saito and Shimon Sakaguchi and Francisco Sala‐de‐Oyanguren and Yvonne Samstag and Sharon Sanderson and Inga Sandrock and Angela Santoni and Ramon Bellm{\`a}s Sanz and Marina Saresella and Catherine Sautes‐Fridman and Birgit Sawitzki and Linda Schadt and Alexander Scheffold and Hans U. Scherer and Matthias Schiemann and Frank A. Schildberg and Esther Schimisky and Andreas Schlitzer and Josephine Schlosser and Stephan Schmid and Steffen Schmitt and Kilian Schober and Daniel Schraivogel and Wolfgang Schuh and Thomas Sch{\"u}ler and Reiner Schulte and Axel Ronald Schulz and Sebastian R. Schulz and Cristiano Scott{\'a} and Daniel Scott‐Algara and David P. Sester and T. Vincent Shankey and Bruno Silva‐Santos and Anna Katharina Simon and Katarzyna M. Sitnik and Silvano Sozzani and Daniel E. Speiser and Josef Spidlen and Anders Stahlberg and Alan M. Stall and Natalie Stanley and Regina Stark and Christina Stehle and Tobit Steinmetz and Hannes Stockinger and Yousuke Takahama and Kiyoshi Takeda and Leonard Tan and Attila T{\'a}rnok and Gisa Tiegs and Gergely Toldi and Julia Tornack and Elisabetta Traggiai and Mohamed Trebak and Timothy I.M. Tree and Joe Trotter and John Trowsdale and Maria Tsoumakidou and Henning Ulrich and Sophia Urbanczyk and Willem van de Veen and Maries van den Broek and Edwin van der Pol and Sofie Van Gassen and Gert Van Isterdael and Ren{\'e} A.W. van Lier and Marc Veldhoen and Salvador Vento‐Asturias and Paulo Vieira and David Voehringer and Hans‐Dieter Volk and Anouk von Borstel and Konrad von Volkmann and Ari Waisman and Rachael V. Walker and Paul K. Wallace and Sa A. Wang and Xin M. Wang and Michael D. Ward and Kirsten A Ward‐Hartstonge and Klaus Warnatz and Gary Warnes and Sarah Warth and Claudia Waskow and James V. Watson and Carsten Watzl and Leonie Wegener and Thomas Weisenburger and Annika Wiedemann and J{\"u}rgen Wienands and Anneke Wilharm and Robert John Wilkinson and Gerald Willimsky and James B. Wing and Rieke Winkelmann and Thomas H. Winkler and Oliver F. Wirz and Alicia Wong and Peter Wurst and Jennie H. M. Yang and Juhao Yang and Maria Yazdanbakhsh and Liping Yu and Alice Yue and Hanlin Zhang and Yi Zhao and Susanne Maria Ziegler and Christina Zielinski and Jakob Zimmermann and Arturo Zychlinsky },
    title = { Guidelines for the Use of Flow Cytometry and Cell Sorting in Immunological Studies (Second Edition) },
    journal = { European Journal of Immunology },
    volume = { 49 },
    number = { 10 },
    pages = { 1457 -- 1973 },
    year = { 2019 },
    doi = { 10.1002/eji.201970107 },
}

@article{2019_divergent_cell_types,
    author = { Rebecca D Hodge and Trygve E Bakken and Jeremy A Miller and Kimberly A Smith and Eliza R Barkan and Lucas T Graybuck and Jennie L Close and Brian Long and Osnat Penn and Zizhen Yao and Jeroen Eggermont and Thomas H{\"o}llt and Boaz P Levi and Soraya I Shehata and Brian Aevermann and Allison Beller and Darren Bertagnolli and Krissy Brouner and Tamara Casper and Charles Cobbs and Rachel Dalley and Nick Dee and Song-Lin Ding and Richard G Ellenbogen and Olivia Fong and Emma Garren and Jeff Goldy and Ryder P Gwinn and Daniel Hirschstein and C Dirk Keene and Mohamed Keshk and Andrew L Ko and Kanan Lathia and Ahmed Mahfouz and Zoe Maltzer and Medea McGraw and Thuc Nghi Nguyen and Julie Nyhus and Jeffrey G Ojemann and Aaron Oldre and Sheana Parry and Shannon Reynolds and Christine Rimorin and Nadiya V Shapovalova and Saroja Somasundaram and Aaron Szafer and Elliot R Thomsen and Michael Tieu and Richard H Scheuermann and Rafael Yuste and Susan M Sunkin and Boudewijn Lelieveldt and David Feng and Lydia Ng and Amy Bernard and Michael Hawrylycz and John Phillips and Bosiljka Tasic and Hongkui Zeng and Allan R Jones and Christof Koch and Ed S Lein },
    title = { Conserved Cell Types With Divergent Features in Human Versus Mouse Cortex },
    journal = { Nature },
    volume = { 573 },
    pages = { 61 -- 68 },
    year = { 2019 },
    doi = { 10.1038/s41586-019-1506-7 },
}

@article{2019_eurovis,
    author = { Thomas H{\"o}llt and Anna Vilanova and Nicola Pezzotti and Boudewijn Lelieveldt and Helwig Hauser },
    title = { Focus+Context Exploration of Hierarchical Embeddings },
    journal = { Computer Graphics Forum (Proceedings of EuroVis 2019) },
    volume = { 38 },
    number = { 3 },
    year = { 2019 },
    doi = { 10.1111/cgf.13711 },
}

@inproceedings{2019_dirk_bartz_prize,
    author = { Thomas H{\"o}llt and Nicola Pezzotti and Vincent van Unen and Na Li and Frits Koning and Elmar Eisemann and Boudewijn Lelieveldt and Anna Vilanova },
    title = { Cytosplore: Interactive Visual Single-Cell Profiling of the Immune System },
    booktitle = { Proceedings of Eurographics - Short Papers and Medical Prize Awards },
    year = { 2019 },
    doi = { 10.2312/egm.20191032 },
}

@article{2019_cytofmerge,
    author = { Tamim Abdelaal and Thomas H{\"o}llt and Vincent van Unen and Boudewijn Lelieveldt and Frits Koning and Marcel Reinders and Ahmed Mahfouz },
    title = { CyTOFmerge: Integrating mass cytometry data across multiple panels },
    journal = { Bioinformatics },
    volume = { btz180 },
    year = { 2019 },
    doi = { 10.1093/bioinformatics/btz180 },
}

@article{2019_cytofclass,
    author = { Tamim Abdelaal and Vincent van Unen and Thomas H{\"o}llt and Frits Koning and Marcel Reinders and Ahmed Mahfouz },
    title = { Predicting cell types in single cell mass cytometry data },
    journal = { Cytometry Part A },
    year = { 2019 },
    doi = { 10.1002/cyto.a.23738 },
}

@article{2019_nature_immunology,
    author = { Na Li and Vincent van Unen and Tamim Abdelaal and Nannan Guo and Sofya Kasatskaya and Kristin Ladell and James McLaren and Evgeniy Egorov and Mark Izraelson and Susana Chuva de Sousa Lopes and Thomas H{\"o}llt and Olga Britanova and Jeroen Eggermont and Noel F.C.C. De Miranda and Dmitriy Chudakov and David Price and Boudewijn Lelieveldt and Frits Koning },
    title = { Memory CD4+ T Cells are Generated in the Human Fetal Intestine },
    journal = { Nature Immunology },
    volume = { 20 },
    number = { 3 },
    pages = { 301 -- 312 },
    year = { 2019 },
    doi = { 10.1038/s41590-018-0294-9 },
}

@article{2018_clinical_cancer_research,
    author = { Saskia J Santegoets and Vanessa J van Ham and Ilina Ehsan and Pornpimol Charoentong and Chantal L Duurland and Vincent van Unen and Thomas H{\"o}llt and Lilly-Ann van der Velden and Sylvia I van Egmond and Kim Kortekaas and Peggy J de Vos van Steenwijk and Mariette IE van Poelgeest and Marij J P Welters and Sjoerd H van der Burg },
    title = { The Anatomical Location Shapes the Immune Infiltrate in Tumors of Same Etiology and Impacts Survival },
    journal = { Clinical Cancer Research },
    volume = { 25 },
    number = { 1 },
    year = { 2019 },
    doi = { 10.1158/1078-0432.CCR-18-1749 },
}

@article{2018_cytofast,
    author = { Guillaume Beyrend and Koen Stam and Thomas H{\"o}llt and Ferry Ossendorp and Ramon Arens },
    title = { Cytofast: A workflow for visual and quantitative analysis of flow and mass cytometry data to discover immune signatures and correlations },
    journal = { Computational and Structural Biotechnology Journal },
    volume = { 16 },
    pages = { 435 -- 442 },
    year = { 2018 },
    doi = { 10.1016/j.csbj.2018.10.004 },
}

@article{2018_plos_circulating_t_cells,
    author = { Sandra Laban and Jessica S. Suwandi and Vincent van Unen and Jos Pool and Joris Wesselius and Thomas H{\"o}llt and Nicola Pezzotti and Anna Vilanova and Boudewijn Lelieveldt and Bart O. Roep },
    title = { Heterogeneity of Circulating CD8 T-cells Specific to Islet, Neo-antigen and Virus in Patients with Type 1 Diabetes Mellitus },
    journal = { PLOS one },
    volume = { 13 },
    number = { 8 },
    pages = { e0200818 },
    year = { 2018 },
    doi = { 10.1371/journal.pone.0200818 },
}

@article{2018_eurovis_waowvis,
    author = { Nicola Pezzotti and Jean-Daniel Fekete and Thomas H{\"o}llt and Boudewijn Lelieveldt and Elmar Eisemann and Anna Vilanova },
    title = { Multiscale Visualization and Exploration of Large Bipartite Graphs },
    journal = { Computer Graphics Forum (Proceedings of EuroVis 2018) },
    volume = { 37 },
    number = { 3 },
    pages = { 549 -- 560 },
    year = { 2018 },
    doi = { 10.1111/cgf.13441 },
}

@article{2018_exp_medicine,
    author = { Na Li and Vincent van Unen and Thomas H{\"o}llt and Allan Thompson and Jeroen van Bergen and Nicola Pezzotti and Elmar Eisemann and Anna Vilanova and Susana M. Chuva de Sousa Lopes and Boudewijn Lelieveldt and Frits Koning },
    title = { Mass Cytometry Reveals Innate Lymphoid Cell Differentiation Pathways in the Human Fetal Intestine },
    journal = { Journal of Experimental Medicine },
    volume = { 215 },
    number = { 5 },
    pages = { 1383 -- 1396 },
    year = { 2018 },
    doi = { 10.1084/jem.20171934 },
}

@article{2018_proteome_research,
    author = { Walid M. Abdelmoula and Nicola Pezzotti and Thomas H{\"o}llt and Jouke Dijkstra and Anna Vilanova and Liam A. McDonnell and Boudewijn Lelieveldt },
    title = { Interactive Visual Exploration of 3D Mass Spectrometry Imaging Data Using Hierarchical Stochastic Neighbor Embedding Reveals Spatiomolecular Structures at Full Data Resolution },
    journal = { Journal of Proteome Research },
    volume = { 17 },
    number = { 3 },
    pages = { 1054 -- 1064 },
    year = { 2018 },
    doi = { 10.1021/acs.jproteome.7b00725 },
}

@article{2018_front_immunol_cytomegalovirus,
    author = { Anke Redeker and Ester Remmerswaal and Esme van der Gracht and Suzanne Welten and Thomas H{\"o}llt and Frits Koning and Luka Cicin-Sain and Janko Nikolich-Žugich and Ineke ten Berge and Rene van Lier and Vincent van Unen and Ramon Arens },
    title = { The Contribution of Cytomegalovirus Infection to Immune Senescence is set by the Infectious Dose },
    journal = { Frontiers in Immunology },
    volume = { 8 },
    number = { 1953 },
    year = { 2018 },
    doi = { 10.3389/fimmu.2017.01953 },
}

@article{2017_vis_deepeyes,
    author = { Nicola Pezzotti and Thomas H{\"o}llt and Jan van Gemert and Boudewijn Lelieveldt and Elmar Eisemann and Anna Vilanova },
    title = { DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks },
    journal = { IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VAST 2017) },
    volume = { 24 },
    number = { 1 },
    pages = { 98 -- 108 },
    year = { 2018 },
    doi = { 10.1109/TVCG.2017.2744358 },
}

@article{2017_vis_cyteguide,
    author = { Thomas H{\"o}llt and Nicola Pezzotti and Vincent van Unen and Frits Koning and Boudewijn Lelieveldt and Anna Vilanova },
    title = { CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis },
    journal = { IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE InfoVis 2017) },
    volume = { 24 },
    number = { 1 },
    pages = { 739 -- 748 },
    year = { 2018 },
    doi = { 10.1109/TVCG.2017.2744318 },
}

@article{2017_nar_brainscope,
    author = { Sjoerd Huisman and Baldur van Lew and Ahmed Mahfouz and Nicola Pezzotti and Thomas H{\"o}llt and Lieke Michielsen and Anna Vilanova and Marcel Reinders and Boudewijn Lelieveldt },
    title = { BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome },
    journal = { Nucleic Acids Research },
    volume = { gkx046 },
    pages = { 1 -- 11 },
    year = { 2017 },
    doi = { 10.1093/nar/gkx046 },
}

@article{2017_tvcg_atsne,
    author = { Nicola Pezzotti and Boudewijn Lelieveldt and Laurens van der Maaten and Thomas H{\"o}llt and Elmar Eisemann and Anna Vilanova },
    title = { Approximated and User Steerable tSNE for Progressive Visual Analytics },
    journal = { IEEE Transactions on Visualization and Computer Graphics },
    volume = { 23 },
    number = { 7 },
    pages = { 1739 -- 1752 },
    year = { 2017 },
    doi = { 10.1109/TVCG.2016.2570755 },
}

@misc{2017_ksomics_tamim,
    author = { Tamim Abdelaal and Ahmed Mahfouz and Thomas H{\"o}llt and Vincent van Unen and Frits Koning and Boudewijn Lelieveldt and Marcel Reinders },
    title = { Mass Cytometry Marker Panel Extension },
    howpublished = { Poster presentation at Poster Presentation, Keystone Symposia on Molecular and Cellular Biology; Single Cell Omics, Stockholm, Swe },
    year = { 2017 },
}

@misc{2017_ksomics,
    author = { Thomas H{\"o}llt and Vincent van Unen and Nicola Pezzotti and Na Li and Marcel Reinders and Elmar Eisemann and Frits Koning and Anna Vilanova and Boudewijn Lelieveldt },
    title = { Interactive Visual Analysis of Mass Cytometry Data by Hierarchical Stochastic Neighbor Embedding Reveals Rare Cell Types },
    howpublished = { Poster presentation at Poster Presentation, Keystone Symposia on Molecular and Cellular Biology; Single Cell Omics, Stockholm, Swe },
    year = { 2017 },
}

@article{2017_hsne_preprint,
    author = { Vincent van Unen and Thomas H{\"o}llt and Nicola Pezzotti and Na Li and Marcel Reinders and Elmar Eisemann and Anna Vilanova and Frits Koning and Boudewijn Lelieveldt },
    title = { Visual Analysis of Mass Cytometry Data by Hierarchical Stochastic Neighbor Embedding Reveals Rare Cell Types },
    journal = { Nature Communications },
    volume = { 8 },
    number = { 1740 },
    pages = { 1 -- 10 },
    year = { 2017 },
    doi = { 10.1038/s41467-017-01689-9 },
}

@inproceedings{2017_vcbm_diftensgroup,
    author = { Changgong Zhang and Thomas H{\"o}llt and Matthan Caan and Elmar Eisemann and Anna Vilanova },
    title = { Comparative Visualization for Diffusion Tensor Imaging Group Study at Multiple Levels of Detail },
    booktitle = { Proceedings of Visual Computing for Biology and Medicine (VCBM) },
    year = { 2017 },
    doi = { 10.2312/vcbm.20171237 },
}

@article{2017_eurovis_diftens,
    author = { Changgong Zhang and Matthan Caan and Thomas H{\"o}llt and Elmar Eisemann and Anna Vilanova },
    title = { Overview + Detail Visualization for Ensembles of Diffusion Tensors },
    journal = { Computer Graphics Forum (Proceedings of EuroVis 2017) },
    volume = { 36 },
    number = { 3 },
    pages = { 121 -- 132 },
    year = { 2017 },
    doi = { 10.1111/cgf.13173 },
}

@article{2016_eurovis_hsne,
    author = { Nicola Pezzotti and Thomas H{\"o}llt and Boudewijn Lelieveldt and Elmar Eisemann and Anna Vilanova },
    title = { Hierarchical Stochastic Neighbor Embedding },
    journal = { Computer Graphics Forum (Proceedings of EuroVis 2016) },
    volume = { 35 },
    number = { 3 },
    pages = { 21 -- 30 },
    year = { 2016 },
    doi = { 10.1111/cgf.12878 },
}

@article{2016_eurovis_cytosplore,
    author = { Thomas H{\"o}llt and Nicola Pezzotti and Vincent van Unen and Frits Koning and Elmar Eisemann and Boudewijn Lelieveldt and Anna Vilanova },
    title = { Cytosplore: Interactive Immune Cell Phenotyping for Large Single-Cell Datasets },
    journal = { Computer Graphics Forum (Proceedings of EuroVis 2016) },
    volume = { 35 },
    number = { 3 },
    pages = { 171 -- 180 },
    year = { 2016 },
    doi = { 10.1111/cgf.12893 },
}

@article{2016_immunity_vvu,
    author = { Vincent van Unen and Na Li and Ilse Molendijk and Mine Temurhan and Thomas H{\"o}llt and Andrea E. van der Meulen-de Jong and Hein W. Verspaget and M. Luisa Mearin and Chris J. Mulder and Jeroen van Bergen and Boudewijn Lelieveldt and Frits Koning },
    title = { Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets },
    journal = { Immunity },
    volume = { 44 },
    number = { 5 },
    pages = { 1227 -- 1239 },
    year = { 2016 },
    doi = { 10.1016/j.immuni.2016.04.014 },
}

@inproceedings{2016_envirvis,
    author = { Thomas H{\"o}llt and Fabio M. de Matos Ravanelli and Markus Hadwiger and Ibrahim Hoteit },
    title = { Visual Analysis of Reservoir Simulation Ensembles },
    booktitle = { Proceedings of Workshop on Visualisation in Environmental Sciences },
    pages = { 1 -- 4 },
    year = { 2016 },
    doi = { 10.2312/envirvis.20161099 },
}

@article{2015_nathazards,
    author = { Thomas H{\"o}llt and Mohamed U. Altaf and Kyle T. Mandli and Markus Hadwiger and Clint N. Dawson and Ibrahim Hoteit },
    title = { Visualizing Uncertainties in a Storm Surge Ensemble Data Assimilation and Forecasting System },
    journal = { Natural Hazards },
    volume = { 77 },
    number = { 1 },
    pages = { 317 -- 336 },
    year = { 2015 },
    doi = { 10.1007/s11069-015-1596-y },
}

@inproceedings{2015_envirvis,
    author = { Thomas H{\"o}llt and Markus Hadwiger and Omar Knio and Ibrahim Hoteit },
    title = { Probability Maps for the Visualization of Assimilation Ensemble Flow Data },
    booktitle = { Proceedings of Workshop on Visualisation in Environmental Sciences },
    pages = { 43 -- 47 },
    year = { 2015 },
    doi = { 10.2312/envirvis.20151090 },
}

@article{2014_tvcg,
    author = { Thomas H{\"o}llt and Ahmed Magby and Peng Zhan and Guoning Chen and Ganesh Gopalakrishnan and Ibrahim Hoteit and Charles D. Hansen and Markus Hadwiger },
    title = { Ovis: A Framework for Visual Analysis of Ocean Forecast Ensembles },
    journal = { IEEE Transactions on Visualization and Computer Graphics },
    volume = { 20 },
    number = { 8 },
    pages = { 1114 -- 1126 },
    year = { 2014 },
    doi = { 10.1109/TVCG.2014.2307892 },
}

@phdthesis{2013_phd_thesis,
    author = { Thomas H{\"o}llt },
    title = { Visual Workflows for Oil and Gas Exploration },
    school = { King Abdullah University of Science and Technology },
    year = { 2013 },
}

@inproceedings{2013_pacificvis,
    author = { Thomas H{\"o}llt and Ahmed Magby and Guoning Chen and Ganesh Gopalakrishnan and Ibrahim Hoteit and Charles D. Hansen and Markus Hadwiger },
    title = { Visual Analysis of Uncertainties in Ocean Forecasts for Planning and Operation of Off-Shore Structures },
    booktitle = { Proceedings of IEEE Pacific Visualization Symposium },
    pages = { 185 -- 192 },
    year = { 2013 },
    doi = { 10.1109/PacificVis.2013.6596144 },
}

@inproceedings{2013_eurographics,
    author = { Thomas H{\"o}llt and Guoning Chen and Charles D. Hansen and Markus Hadwiger },
    title = { Extraction and Visual Analysis of Seismic Horizon Ensembles },
    booktitle = { Eurographics (short papers) },
    pages = { 69 -- 72 },
    year = { 2013 },
    doi = { 10.2312/conf/EG2013/short/069-072 },
}

@article{2012_vis,
    author = { Thomas H{\"o}llt and Wolfgang Freiler and Fritz M. Gschwantner and Helmut Doleisch and Gabor Heinemann and Markus Hadwiger },
    title = { SeiVis: An Interactive Visual Subsurface Modeling Application },
    journal = { IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE SciVis) },
    volume = { 18 },
    number = { 12 },
    pages = { 2226 -- 2235 },
    year = { 2012 },
    doi = { 10.1109/TVCG.2012.259 },
}

@inproceedings{2012_schott_pacificvis,
    author = { Matthias Schott and Tobias Martin and A.V. Pascal Grosset and Carson Brownlee and Thomas H{\"o}llt and Benjamin P. Brown and Sean T. Smith and Charles D. Hansen },
    title = { Combined Surface and Volumetric Occlusion Shading },
    booktitle = { Proceedings of IEEE Pacific Visualization Symposium },
    pages = { 169 -- 176 },
    year = { 2012 },
    doi = { 10.1109/PacificVis.2012.6183588 },
}

@inproceedings{2011_pacificvis,
    author = { Thomas H{\"o}llt and Johanna Beyer and Fritz Michael Gschwantner and Philip Muigg and Helmut Doleisch and Gabor Heinemann and Markus Hadwiger },
    title = { Interactive Seismic Interpretation with Piecewise Global Energy Minimization },
    booktitle = { Proceedings of IEEE Pacific Visualization Symposium },
    pages = { 59 -- 66 },
    year = { 2011 },
    doi = { 10.1109/PACIFICVIS.2011.5742373 },
}

@article{2010_geier,
    author = { Georg Geier and Thomas Pabel and Daniel Habe and J{\"o}rdis Rosc and Markus Hadwiger and Thomas H{\"o}llt and Laura Fritz },
    title = { Computertomographie als zerstörungsfreies Prüfverfahren für Gussteile },
    journal = { Druckguss-Praxis },
    volume = { 7 },
    number = { 8 },
    pages = { 171 -- 174 },
    year = { 2010 },
}

@misc{2009_vis,
    author = { Thomas H{\"o}llt and Markus Hadwiger and Laura Fritz and Philip Muigg and Helmut Doleisch },
    title = { Seismic Horizon Tracing with Diffusion Tensors },
    howpublished = { Poster presentation at Poster Presentation, IEEE Visweek, Atlantic City, NJ },
    year = { 2009 },
}

@article{2008_vis,
    author = { Markus Hadwiger and Laura Fritz and Christof Rezk-Salama and Thomas H{\"o}llt and Georg Geier and Thomas Pabel },
    title = { Interactive Volume Exploration for Feature Detection and Quantification in Industrial CT Data },
    journal = { IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE SciVis) },
    volume = { 14 },
    number = { 6 },
    pages = { 1507 -- 1514 },
    year = { 2008 },
    doi = { 10.1109/TVCG.2008.147 },
}

@mastersthesis{2008_msc_thesis,
    author = { Thomas H{\"o}llt },
    title = { Direct Processing of Compressed Volume Data },
    school = { Universit{\"a}t Koblenz-Landau },
    year = { 2008 },
}

@article{2008_geier,
    author = { Georg Geier and Markus Hadwiger and Thomas H{\"o}llt and Laura Fritz and Thomas Pabel },
    title = { Interaktive Exploration und Quantifizierung von Ungänzen in komplexen Bauteilen },
    journal = { Proceedings of Industrielle Computertomografie (CT Tagung Wels) },
    pages = { 103 -- 108 },
    year = { 2008 },
}